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Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem
Accelerate Your Protein Design Workflow with ProteinMPNN (NIM) on Vecura
MPNN - ML for protein sequence design
Engineering Proteins with 3D Convolutional Neural Networks
Deep Learning for Protein Engineering Primer (AlphaFold 2, ProteinMPNN, RFDiffusion)
Inverse Folding with ProteinMPNN on Neurosnap: Practical guide to protein inverse folding.
Protein Structure and Sequence Generation with Equivariant Denoising Diffusion Probabilistic Models
Design of new protein functions using deep learning–David Baker (University of Washington)
Pretraining on protein sequence and structure for protein engineering
Sequence Design with LigandMPNN
Quantitative Affinity Data at Scale: Addressing the Data Bottleneck in AI-Enabled Protein Design
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Last Updated: September 29, 2026
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Justas Dauparas, University of Washington Abstract: While Dr. David Baker | Director, Institute for Brian Trippe, Columbia University & University of Washington + Jason Yim, MIT Abstract: Construction of a scaffold structure that ... Danny Diaz, University of Texas at Austin Abstract: An extremely important task in biotechnology is the ability to engineer In this video, we inverse fold the e. coli beta lactamase 2025-26 Allen School Distinguished Lecture Series Title: Kevin Yang presents "Convolutions are competitive This video covers LigandMPNN, the successor of Presented by Natasha Murakowska on September 9th, 2026 abstract:
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